Biological systems simulation
Current emphasis on simulation models for evaluating unicellular systems as conceptual target substrates for digital-circuit synthesis research.
Projects
Research, software, extension, and long-term systems agendas.
Project descriptions are intentionally selective and status-aware. They distinguish ongoing work, historical artifacts, planned integrations, and conceptual research agendas.
Portfolio
Three visible project layers
The project page gives a compact map of the academic portfolio without becoming a full Lattes reproduction.
Simulation and design automation tools
Selected software lines include modular simulation, cyber-physical systems design automation, and future research automation workflows.
Applied computing and public-interest software
Extension work connects software engineering, mobile development, community problems, student training, and university outreach.
Project context
Curated project narrative
These notes explain how the selected projects should be interpreted: not as a full inventory, but as a coherent academic and engineering portfolio.
Biological computing and BioCAD-oriented simulation
The active research axis is the specification and validation of simulation models for unicellular systems as candidate target substrates for digital circuit physical synthesis, framed as modeling and design automation rather than laboratory procedure.
- Connects digital systems, BioCAD concepts, systems biology, and whole-cell simulation.
- Requires rigorous abstraction boundaries between digital specifications and biological feasibility.
- Naturally connects to BioCompLab and future repository/documentation pages.
Reusable tools and scientific software artifacts
The portfolio includes simulation tools, design automation suites, educational platforms, web systems, and mobile/embedded prototypes. Public links should be curated rather than dumped from the full academic record.
- GenESys and ADESDToolSuite are the most relevant software anchors for this website.
- PPCWeb, FundosInvest, and the UFSC3D virtual world show applied web/system development experience.
- Historical embedded systems projects document continuity in hardware/software integration.
University extension and community-facing systems
Extension projects demonstrate applied software engineering in public-interest contexts: community integration, educational virtual worlds, financial decision-support services, and assistive embedded systems.
- Useful for attracting students interested in real systems, not only theoretical topics.
- Creates a bridge between research, teaching, and public-facing software development.
- Can later be expanded into pages with screenshots, repositories, reports, and student roles.
Project group
Active projects
Biological systems simulation models for physical synthesis of digital circuits in bacteria
Research project centered on simulation models capable of representing unicellular biological systems as target substrates for the physical synthesis of digital circuits. The website presents this as a computational and modeling agenda, not as a biological protocol.
GenESys — Reborn Generic and Expansible System Simulator
A modular and extensible system simulator oriented to discrete-event simulation, time-driven models, stochastic processes, cellular automata, continuous models, statistical analysis, experimental design, and future parallel/distributed simulation support.
Repository or public release link should be reviewed before publication.
Mobile application for community integration in Florianópolis
Extension project involving modern mobile development to connect local community needs, urban reports, neighbor interaction, cultural events, student training, and public-interest software engineering.
Project group
Concluded or historical projects
UFSC3D — virtual 3D environment for teaching, research, and extension
Extension project focused on a virtual 3D environment representing institutional spaces and supporting remote teaching, lectures, dissemination, experimentation, and interaction through a multiuser virtual world.
FundosInvest — web service for investment fund comparison
Public-interest web service concept for helping inexperienced investors analyze investment funds using data collection from public sources and quantitative indicators such as Sharpe ratio, beta, and fund correlation.
Wearable embedded system for vibrotactile sensory substitution
Extension project involving an embedded wearable system that translated sound streams into vibrotactile stimulus patterns, framed as an assistive computing prototype for people with hearing impairment.
Historical embedded and simulation systems portfolio
Selected historical line including architecture simulators, discrete simulation systems, telescope automation, building automation, public-transport software, and educational computing tools. The website keeps this as a curated signal, not as a full inventory.
Project group
Inactive projects
ADESDToolSuite — Application-directed cyber-physical systems design automation
Tool suite related to automated design and generation of cyber-physical systems, design-space exploration, multi-objective evolutionary optimization, and hardware/software platform modeling.
Open referencePPCWeb — web system for course pedagogical project design
Web system conceived to support the creation and monitoring of undergraduate course pedagogical projects using a systems-engineering perspective on educational design, requirements, curriculum structure, and competency development.
Project group
Planned and conceptual projects
BioCompLab research portal integration
Future integration point between the professor's personal academic website and the BioCompLab portal, preserving independent identities while allowing shared research themes and calls for collaboration.